Medical Biology and Genetic Laboratory

Medical Biology and Genetic Laboratory is equipped to perform the various genetic procedures such as examination of organisms on molecular level, DNA and RNA isolation/duplication, spectrophotometric and electrophoresis techniques in order to clarify the reasons behind diseases, to obtain information concerning diagnosis and treatment as well as research.

Medical Biology and Genetic Laboratory consist of 4 separate laboratories.

In Microscopy Laboratory, prepared samples are examined under the microscope. In DNA/RNA Isolation Laboratory, DNA/RNA are isolated manually or by kits.

In PCR Laboratory, certain parts of isolated DNA/RNA are duplicated in special tubes. Spectrophotometric measurements are also conducted.

In Electrophoresis Laboratory, migration of loaded molecules in an electrical field or gel electrophoresis result imaging of PCR samples are conducted.

In Cell Culture Laboratory, molecular reasons of the diseases as well as biological activities of candidate biomolecules in in vitro cultured cells are researched.

 

Administrative Staff

Vice Rector

Prof. Dr. Ahmet İLVAN

[email protected]

444 1 428 - 56102

Dean

Prof. Dr. Özgün ENVER

[email protected]

444 1 428 - 28701

Laboratories Coordinator

Öğr. Gör. Veli Bülent UÇAR

[email protected]

444 1 428 - 14628

Laboratuvar Koordinatör Yardımcısı

Melike ÖZDEMİR CENGİZ

[email protected]

444 1 428 - 56015

Academic Staff

Department Head

Prof. Dr. Berrin ERDAĞ

[email protected]

444 1 428 - 52155

Assoc. Dr.

Ahu SOYOCAK

[email protected]

444 1 428 - 52603

Assoc. Dr.

Gülşah KOÇ

[email protected]

444 1 428 - 52604

Dr.

Samet UÇAK

[email protected]

444 1 428 - 56012

Dr.

Tuğba SOYDAŞ

[email protected]

444 1 428 - 57007

Dr.

Arta FEJZULLAHU

[email protected]

444 1 428 - 28503

Dr.

Kübra AÇIKALIN COŞKUN

[email protected]

444 1 428 - 52052

Dr. Öğretim Üyesi

Murat KAVRUK

[email protected]

444 1 428 - 52153

Culture Media Preparation Laboratory

Magnetic Mixer

General Information It is used for the dissolution and mixing of the materials in a prepared solution by adjusting the temperature and cycle with the use of magnetic fish.
Brand & Model Dragon – MS-H-S
Technical Details

Capacity 20 L
Cycle 0-1500 rpm
Temperature Max 340 °C
Heating time for 1 liter of water 6 K/min
Analog Cycle and Temperature Setting
350°C Mechanical Heat Stopper for Safety

Orbital Shaker

General Information It is used for homogeneously and cyclical shaking of the liquids in glass containers in various shapes and volumes.
Brand & Model Stuart -SSL1
Technical Details

Speed range 30 to 300 rpm
Operational temperature range +4°C to +40°C
Maximum load 10 kg
Maximum humidity allowed %80 230V, 50 Hz

230V, 50 Hz

DNA/RNA Isolation Laboratory

Shaker Double Boiler

General Information It is used for slowly heating the samples in a fixed temperature, incubation or preserving its temperature without directly subjecting the sample to the fire during research and practices.
Brand & Model Nükleon – NCS 30
Technical Details

Tank Capacity 30 L
Operation temperature range +5 ° C/ + 99.9 ° C
Speed cycle 20-250 rpm
Horizontal shaking motion
Timer 1 min – 99 hours 59 min + Continuous operation
Stainless steel interior
230 V, 50Hz

Heat Block (Shaker + Cooler)

General Information It is a digital temperature and timer controlled equipment used for DNA and enzyme analyses, agar incubation and cell culture analyses.
Brand & Model Allsheng 1685E- Dijital Soğutuculu
Technical Details

3 mm Orbital shaking motion

25 rpm mixing accuracy
Time setting resolution 1 min

150W/240V

Mini Centrifuge

General Information It is used for collecting cells, blood works and DNA collection. Heating of the samples after the operation is prevented by the automatic door, and easy access to the samples is established.
Brand & Model Eppendorf AG Minispin
Technical Details

Speed 800-13.400 rpm (100 rpm steps)
Rotor capacity 12 x 1.5 /2 ml container, 2 x PCR string
Short cycle button for quick and easy centrifuge

Speeding time 13 s
Stopping time 12 s
15 secs – 30 min timer

230V, 50/60 Hz, 70 W

 

Cooler centrifuge

General Information It is an electrical motor equipment used for fixed axis cyclical turning motion. High cycle of the equipment helps with the separation of the solutions with the effects of centrifugal force.
Brand & Model Thermo Scientific Megafuge 16R
Technical Details

Temperature range -10 °C  +40 °C,
Operation time 9 hours 99 minutes
Speed range 9
Stopping range 10
CSA Certified, CE Documented

230 V , 50/60 Hz

Thermal Block

General Information It is used for the temperature control of fast heating and cooling steps in various tests.
Brand & Model Eppendorf - Thermostat Plus
Technical Details

Temperature range -5° C to 99 ° C
Heating rate 5° C/min

100-240 V, 0.8 A, 50/60 Hz, 75W

Ultrasound Bath

General Information The formation of gas bubble by the ultrasound soundwaves is called “cavitation”, and the pop of these bubbles is called “acoustic cavitation”. The shockwaves caused by this popping creates a brushing effect on the surfaces. Thus, helps with the quick and precise cleaning by reaching deep corners, cracks and areas which are not possible to reach with other methods.
Brand & Model Protechology
Technical Details

4 L Capacity
300 W Heating power
20-90 °C Temperature range, 0-60 minute timer
220 V/50 Hz Power source

Vortex

General Information It is used for mixing the reagents of a test and a sample or thinner, and to provide homogenous mixture.
Brand & Model Scilogex MX-S
Technical Details

250-2500 rpm

Allowed environment temperature 5-40 ° C
Shaded pole motor

110 V, 60 Hz

Electrophoresis Laboratory

Vertical Electrophoresis

General Information Vertical Electrophoresis Electrophoretic analysis is a procedure based on the migration principle of molecules that are dissolved in an electrical field by their electrical load. The equipment is compatible with small, medium and large molecules for electrophoretic separation of polyacrylamide gels prepared with acrylamide polymerization.
Brand & Model Thermo Scientific - 7339 P8DS-2
Technical Details

Gel dimensions: 10 x 8-10 cm
Gel length: 8-10 cm
Tampon capacity 300 ml
Gel width 10 cm

Drying Oven (Incubator)

General Information It is an equipment used for reproducing microorganisms, sterilization process, heating, drying, and making chemical reactions between 5°C and 75°C.
Brand & Model Thermo Scientific - Heraterm IGS100
Technical Details

Temperature range: 5°C to 75°C
Loading capacity per shelf: 25/55 kg/Ibs
Natural noise none
Heating time: 25 minutes
Max. 16 shelf
120V / 4.5A / 540W

Gel Imaging System

General Information It is used for imaging the fragments under electrophoresis under UV light.
Brand & Model Vilber - E box VX5 Serial N
Technical Details

Digital Camera
590 nm Light filter
Manuel Focus System, Colored LCD Screen
Saving the image to device’s memory, USB connection

Automated UV stopping system when the lid is open, safety latch

UV stopping after 20 minutes of operation

Microwave Oven

General Information It is used for boiling the gel for gene studies.
Brand & Model Arçelik - MD-574
Technical Details

Oven capacity: 17 l
Timer: 0-30 min
Lid-lock system
Rotary glass plate

Horizontal Electrophoresis

General Information Electrophoretic analysis is a procedure based on the migration principle of molecules that are dissolved in an electrical field by their electrical load. Horizontal electrophoresis tank helps with separating the molecules by their size, structure, environmental density, ionic force and applied current.
Brand & Model Thermo Scientific - 7309 B1
Technical Details

CE Documented
Gel length 11 centimeter
Sample size: 5- 34
Tampon capacity: 600 ml
Gel width: 9 centimeter

Immunofluorescence Microscope Laboratory

General Information
Brand & Model
Technical Details

Immunofluorescence Microscope

General Information It is used for stimulating the samples by fluorescent markers and process through filters, and examination/marking of cell parts and microorganisms, and for obtaining information concerning the information about molecule distribution and quantity.
Brand & Model ZEISS - Scope.A1 AX10
Technical Details

Operation environment temperature -10 °C to +40 °C
Operation relative humidity range 35 °C/max. 75 %
3 different filter (DAPI, FITC, and RHODAMINE).
5 different objective (5X, 10X, 20X, 40X and100X).
Obtained images are saved as a photo with the computer software

Stereo Microscope

General Information It is a microscope operating as a fixed binocular rather than light microscope and used for examining the samples without glass slide and cover glass and used for collecting 3D imagery. It is possible to obtain high contrasted, bright and clear images as well as wide objective in industrial and clinical studies with its ergonomic design.
Brand & Model MOTIC - SFC-11A N2GG
Technical Details

45º angle, 360º rotatable binocular headpiece
Wide angle eyepiece WF10X / 20mm
Magnifying 10X-20X
Operation distance 95 mm
Pole and headpiece holder base stand
Rough focus with tension setting
Main feed 220V-240V (CE)
White and frosted glass sheets

Microbiology/Medical Biology and Genetics Laboratory

-90°C Deep Freeze

General Information It is used for storing the samples by preserving their features for a long period of time in ultra-lower temperatures. The cooling process can be conducted in precise temperatures between -45°C to -90°C.
Brand & Model Nüve – DF 590
Technical Details

Capacity 560 L
Temperature adjustment range -45°C/-90°C
Temperature alarm range +5/25°C
Auditory and visual power failure alarm
Auditory and visual open-door alarm
Automatic charged 12 hour battery

Stainless steel interior

4 wheels and 2 anchor wheel

Microorganism Identification Laboratory

Biological Safety Cabin

General Information It is used for procedures such as preventing the distribution of harmful biological matters, protection of users and samples, microbiology, genetic combination and analyses of samples with biological danger which requires a sterile environment.
Brand & Model Thermo Scientific – Safe 2020
Technical Details

H14 HEPA EN 1822, most penetrating particle size (MPPS) 99,995%
Max. 40 °C room temperature
Air flow speed: Input 0.45 m/sec, Output 0.36 m/sec

230 V - 50/60 H

Microscopy Laboratory

Light microscope with visual attachment

General Information It is used for reflecting the visuals to LCD screens in order for students to see. It is used in photographing, editing and recording the images through computer software.
Brand & Model Olympus CX41 RF
Technical Details

30-60° Tube angle
48-75 mm pupillary distance
100-120 / 220- 240 V
0.42/0.25 A, 50/60 Hz

Light microscope

General Information It is used for magnifying the images of objects and increasing the clarity by adjustment and utilizing the lenses, and used for biological research.
Brand & Model Olympus CX22 RFS1
Technical Details

30° Tube angle
48-75 mm pupillary distance
Upper limit stopper feature
100 - 120 / 220 - 240 V, 0.42 / 0.25 A, 50/60 Hz

PCR Room

ELİSA Well Wash

General Information It is used for washing the cell cultures, protein lines, Western blots and beads as well as DNA purification protocols. The equipment determines the microplate format compatibility, number of canal heads and distributed liquids, and aspirated volume range; helps with programming the cycles and durations, well selection for the customized procedures.
Brand & Model Thermo Scientific Well Wash
Technical Details

50-1000 uL Wash capacity

1x8 washing heads
5 to 100 ml Prime capacity
<%5 accuracy
USB connection
LCD display
CE documented

Spectrophotometer/ELISA Reader

General Information It is used for measuring the quantity of the substance which is looked for in the solution by identifying the intensity of light penetrated through the solution. The analysis is conducted by correctly placing the sample and adjusting the desired wavelength.
Brand & Model Thermo Scientific Multiskan Go
Technical Details

200-1000 nm

6 seconds with 96 well plate, 10 second measuring with 384 well plate
Max: <110w power consumption, <2.5w power save
Reading range up to 4 Abs
Wavelength resolution 1 nm
Wavelength accuracy 2 nm
Incubation temperature range 2 ° to 45 ° C
Both microscope and cuvette range
Multiple language selection

Thermocycler (PCR)

General Information It is used for amplifying the DNA and RNA particles by polymerase chain reaction (PCR). It is used for quickly and precisely increasing and decreasing the temperature of the samples contained in a block, results in denaturation and reconnection with various reagents. Amplified genetic material can be used in procedures such as cloning, sequencing, expression analysis and genotyping.
Brand & Model Techne – 5PrimeG / 02
Technical Details

96 well
Sample capacity: 0.2 ml
Max heating: 3.4 ° C per second
Block temperature range: 10 ° C to 100 ° C (4 ° C final hold)
Max number of recorded programs 1000
Adjustable temperature lid: 35° C to 115° C or off
5.7 inch touch screen
Auto restart in case of a power outage
100-230 V, 50-60 Hz

Sterilization Laboratory

UV Pure Water

General Information It is a device used for producing high quality water rather than tap water in procedures such as chromatography, elemental analysis, tissue culture, molecular biology and biochemistry, ant autoclave.
Brand & Model Merck Millipore - Direct Q5UV
Technical Details

Production flow 5 L/hour 25°C +/- %15
Flow speed >0.5 L /minute
Resistance measurement 18,2 ΜΩ cm in 25 ° C
Tap Water Pressure from 0.5 to 6 bar
Tip I or Tip III
UV measurement
100-250 V

Rezervasyon Takvimi
kullanim

Makale Başlığı

02.02.2020 Detaylar
LaboratuvarCihaz AdıTest Adı/Tedavi Parametreleri/Yapılan Uygulamalar
DNA/RNA Isolation LaboratoryMini Centrifuge, Vortex, Shaker Double BoilerGenomic DNA Isolation
PCR RoomSpectrophotometerDNA Concentration Calculation
PCR RoomPCROligonucleotide Synthesis
PCR RoomPCRGene Amplification
Electrophoresis LaboratoryVertical ElectrophoresisAgarose Gel Electrophoresis
Electrophoresis LaboratoryGel Imaging SystemAgarose Gel Electrophoresis Imaging
PCR RoomPCRMutation Analysis with Restriction Enzymes
PCR RoomPCRDNA Sequence Analysis, Sequencing
PCR RoomPCRAll Genome, Single and Multiple Gene Expression Analysis
PCR Room_Bioinformatics Analysis
DNA/RNA Isolation LaboratoryMini Centrifuge, Vortex, Shaker Double BoilerDNA Isolation from Plant
Istanbul Aydin University Halit Aydın Kampüsü No:38 , Sefaköy–Küçükçekmece, Istanbul, 34295 Tel: 444 1 428

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